How to Find the Cheapest Flights from Manila to Tokyo in 2025

How to Find the Cheapest Flights from Manila to Tokyo in 2025

Why Manila to Tokyo is Always in Demand

Tokyo remains one of the top destinations for Filipino travelers — whether for cherry blossoms, shopping in Shibuya, or food trips in Tsukiji. The only challenge? Plane tickets can eat up a big chunk of your budget.

At First Class FlightCo, we help you find affordable flights so you can enjoy Japan without overspending. This guide shares the best tips and tricks to score cheap flights from Manila to Tokyo in 2025.

🛫 1. Best Time to Book Flights

Timing is everything when booking your Tokyo flight:

    1. 2–3 months in advance usually gives the best balance of price and seat availability.
    2. Avoid peak seasons like late March–April (cherry blossom season), early May (Golden Week), and December holidays.
    3. Cheapest months are January, September, and mid-November.
    4. Fly midweek (Tuesday–Thursday) for lower fares compared to weekends.

✈️ 2. Cheapest Airlines from Manila to Tokyo

Several airlines operate direct flights between Manila (MNL) and Tokyo (Narita NRT or Haneda HND):

l Budget Airlines: Cebu Pacific, Jetstar, ZIPAIR Tokyo

      • Usually cheapest, but baggage and meals cost extra.

l Full-Service Airlines: Philippine Airlines, All Nippon Airways (ANA), Japan Airlines (JAL)

      • Higher base fare, but includes luggage, meals, and entertainment.

👉 Pro Tip: Mix and match airlines. For example, fly Cebu Pacific to Tokyo and return via ANA — this can save you money while still giving comfort on your return flight.

📍 3. Airport Choices & Routes

Knowing your options can also lower your travel costs:

    1. Narita International Airport (NRT): More flights, often cheaper, but ~1 hour from Tokyo city center.
    2. Haneda Airport (HND): Closer to downtown Tokyo (~30 min), sometimes slightly more expensive.
    3. Alternative Departures: If you’re near Clark or Cebu, flights from those airports can sometimes be cheaper than Manila.

💰 4. Proven Money-Saving Tips

Here are practical hacks that frequent travelers swear by:

    1. Book on Tuesdays or early mornings. Airlines often release discounted fares then.
    2. Use incognito or private browsing mode. This prevents websites from tracking your searches and raising prices.
    3. Choose red-eye flights. Late-night departures are usually cheaper.
    4. Travel light. Budget airlines can charge ₱1,500–₱3,000 for checked baggage each way.
    5. Sign up for newsletters and promos. First Class FlightCo sends alerts for flash sales and package deals.

🏨 5. Bundle Flights + Hotels for Bigger Savings

Did you know you can save up to 20–30% by booking your flight and hotel together?

Example:

    • Manila–Tokyo roundtrip flight: ₱12,000
    • 4 nights hotel in Shinjuku: ₱16,000

Package price (flight + hotel via First Class FlightCo): ₱22,000


That’s ₱6,000 in savings right away.

 

👉 Pro Tip: Use our Flight + Hotel bundle tool to compare different packages instantly.

❓ Frequently Asked Questions

Q: How much is a roundtrip Manila–Tokyo flight in 2025?

A: Prices range from ₱8,000–₱15,000, depending on the season and airline.

Q: What’s the cheapest month to fly to Tokyo?

A: January, September, and mid-November usually offer the lowest fares.

Q: Do budget airlines include luggage?

A: Most don’t — you’ll need to add baggage allowance separately.

Q: How long is the flight from Manila to Tokyo?

A: Around 4 to 5 hours, depending on the airport.

🎯 Conclusion: Book Your Tokyo Trip Today

With the right timing and tools, flying from Manila to Tokyo in 2025 doesn’t have to break the bank. From choosing the right airline to booking bundles, there are many ways to save.

At First Class FlightCo, we make it easy to compare flights, hotels, and packages — so you spend less time searching and more time enjoying your Japan adventure.

👉 Ready to fly? Start searching for your Manila–Tokyo flights today with First Class FlightCo and get the best deals in just a few clicks.

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